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Note This capability is a very recent development on Windows systems, and we are just starting to really test out running AFNI and SUMA through it. Right now, most major functionality seems to work, though in some cases graphics can be slow. We would still recommend Linux or Mac systems for large-scale processing at this time.

At present, “copy+paste” functionality into the default command window works a bit awkwardly. One should be able to copy/paste by selecting tabs from a drop-down panel in the upper left of the window. (As part of the instructions here, a terminal with nicer interface will be installed.) Other operating systems allow for either tcsh or bash shells to be run as default in the terminal.

However, the Windows-Ubuntu presently does not appear to allow tcsh as default (perhaps as forewarned by its descriptive name. Install Mandarin Keyboard there. ), and therefore we describe the system setup only for staying with bash. Importantly, as with other installation instructions, you are required to have administrator privileges on your operating system.

We assume your version of Ubuntu is 16.04, and so you should, you should now follow the following setup instructions through “Make AFNI/SUMA profiles”. While noting the following: • Again, at present it does not appear possible to change shells to tcsh, so that optional step can be skipped. • The R package installation part might be slow, on the order of hours. Meditation is often a good thing, anyways. • You should include the optional gnome-terminal installation in the first set of steps, and then the following odd patch is also required. • Install Ubuntu terminal fonts as described.

• Follow these gnome-terminal steps: • The default profile “use colors from system theme” shows an all-black terminal. To fix this: select the Edit tab, then Profile, turn off “use colors.”, and finally simply pick a scheme+palette that you like. • In gnome-terminal, everything is standard and similar to other linux implementations, and the middle button pastes whatever is selected in the BoUoW terminal or other gnome-terminal. Shift-Ctrl-c copies, and Shift-Ctrl-v also pastes. • Like most Linux systems, some things have to be done with sudo permissions. The username and password may have nothing to do with their Windows login. To reset the password, follow these instructions: • From the default command window, type Super[windowskey]+X, then A.

You can change the default user to root. Cp $HOME/abin/AFNI.afnirc $HOME/.afnirc suma -update_env Purpose: As noted in the, AFNI and SUMA have a lot of default settings, controlled using environment variables. The above initializes vanilla-mode profiles with default values for both AFNI and SUMA.